Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015858792.1_cds_XP_016514085.1_26569
CDS Infomation

[gene=LOC107830915] [db_xref=GeneID:107830915] [protein=zeta-carotene desaturase, chloroplastic/chromoplastic] [protein_id=XP_016514085.1] [location=join(52662..52848,53921..54045,54199..54333,54615..54687,54836..54909,55284..55388,55508..55752,55904..55991,56136..56178,56278..56434,56544..56672,56798..56870,57658..57822,58349..58516)] [gbkey=CDS]
Sequence

ATGGCTACTTCTTCAGCTTATCTTTGTTGTCCTGCAACTTCTGCTACTGGAAAGAAACAT
ATTTTGCCAAATGGGTCAGCTGGATTCTTGGTTTTCCGTGGTCCCCGTTTGTCCAACCGG
TTTGTGACCCGGAAGTCAGTTATTCGTGCTGATTTGGACTCCATGGTCTCTGATATGAGT
ACTAATGCTCCAAAAGGGCTATTTCCACCTGAACCTGAACATTATCGGGGGCCAAAGCTG
AAAGTAGCTATTATTGGAGCTGGGCTTGCAGGCATGTCAACTGCTGTGGAGCTCTTGGAT
CAAGGACATGAGGTGGATATATATGAATCAAGGCCTTTTATTGGTGGGAAAGTGGGATCT
TTTGTTGATAGACGTGGAAACCACATTGAAATGGGACTGCATGTGTTCTTTGGTTGCTAT
AATAATTTGTTCCGTTTGTTAAAAAAGGTGGGTGCTGAAAAAAATCTGCTAGTGAAGGAC
CATACTCACACATTTGTAAATAAAGGGGGTGAAATAGGGGAGCTTGATTTCCGCTTTCCA
GTTGGAGCACCCCTACACGGAATTAATGCATTTTTGTCTACCAATCAGCTAAAGATTTAT
GATAAGGCTAGAAATGCTGTAGCTCTTGCCCTTAGTCCAGTGGTGCGGGCTTTAGTTGAT
CCAGATGGCGCGTTGCAGCAGATACGTGATCTAGATAGTGTAAGCTTTTCAGAGTGGTTT
ATGTCTAAAGGTGGGACGCGTGCTAGCATCCAGAGGATGTGGGATCCTGTCGCATATGCT
CTTGGATTCATTGACTGTGACAATATCAGTGCTCGGTGTATGCTCACTATATTTGCATTA
TTTGCCACTAAAACGGAGGCTTCCCTATTACGCATGCTTAAAGGTTCTCCGGACGTTTAT
TTGAGTGGTCCAATTAAGAAGTACATCTTGGATAAGGGGGGAAGGTTTCACATGAGGTGG
GGGTGCAGACAGGTACTCTATGAGACATCCTCTGATGGCAGTATGTATGTCAGCGGGCTT
GCCATGTCAAAGGCCACTCAGAAGAAAGTTGTAAAAGCTGATGCCTATGTCGCTGCATGT
GATGTCCCTGGAATTAAACGATTGGTACCTCAGAAGTGGAGGGAATTGGAATTCTTTGAC
AACATTTACAAATTGGTTGGAGTGCCTGTTGTTACGGTACAACTACGATACAATGGCTGG
GTTACAGAGTTGCAGGACTTGGAGCGTTCGAGGCAATTGAAGCGCGCTACAGGTTTGGAC
AATCTCCTGTATACACCAGATGCAGATTTCTCTTGCTTTGCGGACCTTGCATTGGCATCT
CCTGAAGATTATTACATTGAGGGCCAAGGCTCATTGCTTCAATGTGTCCTTACACCTGGT
GACCCTTACATGCCTCTACTAAATGATGAAATCATAAAAAGAGTGTCAAAGCAGGTTTTG
GCACTATTTCCTTCTTCCCAAGGTCTTGAGGTTACCTGGTCATCAGTTGTGAAAATTGGG
CAATCCCTATATCGTGAAGGACCTGGTAAAGACCCATTCAGACCTGATCAGAAGACTCCA
GTGGAAAATTTCTTTCTTGCTGGCTCATATACAAAACAGGACTACATAGATAGCATGGAA
GGGGCAACTCTTTCAGGTAGGCAAGCATCTGCATACGTATGTGATGCTGGCGAGAAGCTG
GTGGTGTTGCGGAAAAAGATTGCTGCTGCTGAGTCAAACGAGATCTCTGAAGGTGTATCA
GTATCTGATGAGTTGAGTCTTGTCTGA

Peptide Sequence

PEP ID

XP_016514085.1
PEP Infomation

PREDICTED: zeta-carotene desaturase, chloroplastic/chromoplastic [Nicotiana tabacum]
Sequence

MATSSAYLCCPATSATGKKHILPNGSAGFLVFRGPRLSNRFVTRKSVIRADLDSMVSDMS
TNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGS
FVDRRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNKGGEIGELDFRFP
VGAPLHGINAFLSTNQLKIYDKARNAVALALSPVVRALVDPDGALQQIRDLDSVSFSEWF
MSKGGTRASIQRMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVY
LSGPIKKYILDKGGRFHMRWGCRQVLYETSSDGSMYVSGLAMSKATQKKVVKADAYVAAC
DVPGIKRLVPQKWRELEFFDNIYKLVGVPVVTVQLRYNGWVTELQDLERSRQLKRATGLD
NLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLLNDEIIKRVSKQVL
ALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVENFFLAGSYTKQDYIDSME
GATLSGRQASAYVCDAGEKLVVLRKKIAAAESNEISEGVSVSDELSLV

Transcript Sequence

Gene sequence data has not been registered.